rs47411878 SNP Detail

Summary

• ID
  rs47411878
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73951055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GCACTCTTAG CTAAGCCCAT
  S
  TGTGTAGCAA ACTCTCATAT AAACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147453940	ENSMUSSNP1163983	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss325684977	CHEV_18_73977638	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47411878					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73951055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	1963 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	1478 bp upstream
Rr353118	regulatory region 353118	1254 bp distal
Tssr153889	transcription start site region 153889	1441 bp upstream