rs47412436 SNP Detail

Summary

• ID
  rs47412436
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16805216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCACAGAGCC CCCAATGGAG GAGCTAGAGA AAGTACCCAA
  AGATCTAAAG GGATCTGCAA TCCTATAGGT GGAACAACAA TATGAACTAT CCAGTACCCC
  C
  CTGGAGCTCG AGTCTCTAGC TGCATAGGAA TCAGAAAATG GCCTAGTCAG CCATCAGTGG
  AAAGAGAGGC CCATTAGTTG TGCAAACTTT ATTTGCCTCA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148196684	ENSMUSSNP4289252	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47412436					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16805216 () rs orientation: forward

Symbol	Name	Function Class
Rr370925	regulatory region 370925	1632 bp upstream