rs47413036 SNP Detail

Summary

• ID
  rs47413036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128677440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGAAC ACAGCAGGTG
  TTGAGGAATG ATTTAAGGAA AGGTCAGAGT GGCTCTTCCT CGAGCTTCCA GATTTCAAGG
  CCTTTTTTTC TGTACACATC CCTAGGACTC TGTATTGACC CACCCAGAAC ACATGTATCA
  AATCACTGCC TGGTGCCAAT TTCCCCACAC AGTGTGCTCT CTTGAAAAAG ACTGAGGGGC
  Y
  ATAGGTCACT TTGTCAATGG GACAGAGGAA TGAGATATCA TCTACCATGA AACAAGGAGT
  GAAGGGTTTT ATTTCCTTTT CCTTTTCCAT TTCCTGTGTG TGTGTGTGTA CAGTGCATTC
  ATCTGTGGAG ACCAGAGGAC ACTCTCAAGT GTCACCCCAA AACCATCAGC ATCTTGTTTT
  GCTGAGACAA GGTCTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60795871	NES16470132	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47413036					SNP	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795871	NES16470132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128677440 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	1223 bp upstream
Gm70593	predicted gene, 70593	within coordinates