rs47413047 SNP Detail

Summary

• ID
  rs47413047
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAATATCCT GGCGAACTTT GTGCTATCTG TATGACCAAG
  ACCATGTCAG AGCCTCCCCT AGAGCCTTAA GGTATCATCT ATAATGGGTC AGCTAGGTGG
  K
  GGGGGGGGGG CGCATGCCTT TACTTCCGGT ATTCTTCTCC TAAACCCTTA AGATGTCATA
  TGTAATCAGT CACCTGGGTG GTGGTGGTGC ATGCCTTTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148114607	ENSMUSSNP1697567	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47413047					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223289 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1703 bp downstream
Rr397444	regulatory region 397444	1288 bp downstream
Rr568752	regulatory region 568752	1198 bp distal
Rr568753	regulatory region 568753	1442 bp distal
Rr568754	regulatory region 568754	1404 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	8 bp upstream
Tssr21318	transcription start site region 21318	801 bp upstream
Tssr21319	transcription start site region 21319	1200 bp upstream
Tssr21320	transcription start site region 21320	1239 bp upstream
Tssr21321	transcription start site region 21321	1331 bp upstream
Tssr21322	transcription start site region 21322	1476 bp upstream
Tssr21323	transcription start site region 21323	1523 bp upstream
Tssr21324	transcription start site region 21324	1555 bp upstream
Tssr21325	transcription start site region 21325	1595 bp upstream
Tssr21326	transcription start site region 21326	1617 bp upstream
Tssr21327	transcription start site region 21327	1666 bp upstream
Tssr21328	transcription start site region 21328	1704 bp upstream
Tssr21329	transcription start site region 21329	1717 bp upstream
Tssr21330	transcription start site region 21330	1739 bp upstream
Tssr27228	transcription start site region 27228	1832 bp downstream