AATAA TAAGTTTATA TTAAATGGGG W GGCTATGAGG TTCTTATTAG AAACA W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss147409325 | ENSMUSSNP4427345 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | A | ||
ss320487087 | CHEV_2_121942596 | CHEVERUD | SCREENING_POP | f | SNP | T | A | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs47413684 | SNP | A | A | A | T | A |
Location: Chr2:121947341 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12168 | CpG island 12168 | 1097 bp proximal | ||||||
Gm75635 | predicted gene, 75635 | 1675 bp upstream | ||||||
Rr55508 | regulatory region 55508 | 459 bp proximal | ||||||
Rr58060 | regulatory region 58060 | 141 bp distal | ||||||
Rr373779 | regulatory region 373779 | 536 bp upstream | ||||||
Spg11 | SPG11, spatacsin vesicle trafficking associated | within coordinates | ||||||
Tssr19802 | transcription start site region 19802 | 64 bp upstream | ||||||
Tssr19803 | transcription start site region 19803 | 1679 bp upstream | ||||||
Tssr25950 | transcription start site region 25950 | 1457 bp downstream | ||||||
Tssr25951 | transcription start site region 25951 | 1504 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|