rs47414070 SNP Detail

Summary

• ID
  rs47414070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45175986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAGAAT AATAAGCAAT
  CCATTTGTTC ATGGTATGAA GAAGCTGAGA GTGGGAGGGA CCTAGTCGTG GTTTTCTGCT
  GGAGATGAAC CCAGTGCTTT GTGATGCTAG ACAAGGATTG CTGCTAGGTG AACCAGCCCT
  GGGTGAGTGG GGCACTTTAG AGCCTCCTCT GCCAAGTCTT CAGGCATCTA AGATAACAAA
  Y
  CCTGTGGGTG TCAGTACAGA CTATCATCTC TCTACCAATC TAATCTTTGT GTGTGGGTAT
  GTATATCTGA TGTGTGTGCA CACGCATGTA CGCATGTGCG TATTTGTGTG TGTTAGTGTA
  GTGTGAACGT CAGAGAACAA CCAGACGTCA GTCTTCCGTC TTCCACTTTG TTTGAGACAA
  GCCCTCTTTG GTGTTTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388319	NES16764935	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47414070					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388319	NES16764935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45175986 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Mir7086	microRNA 7086	1955 bp downstream
Tssr84758	transcription start site region 84758	194 bp upstream
Tssr89253	transcription start site region 89253	1749 bp upstream
Tssr89254	transcription start site region 89254	1680 bp upstream
Tssr89255	transcription start site region 89255	1620 bp upstream
Tssr89256	transcription start site region 89256	1589 bp upstream
Tssr89257	transcription start site region 89257	498 bp upstream
Tssr89258	transcription start site region 89258	454 bp upstream
Tssr89259	transcription start site region 89259	437 bp upstream