rs47417070 SNP Detail

Summary

• ID
  rs47417070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116389443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAACAA AACAAAACGT
  TCAGTGACAT ATTTCGGTTC ATCCGCACGT CAGTTTCAAT CATTTAACCA ACTCCCAAAA
  CTGGAAAAAT CAGGAATTCT GTACATTCAA AACATAAGTC AACCCGTAAA GCCCTTCGTC
  GGACCCCTGG GGATACCTTG ATCTTCACAG AGTTTACACT AGGGTATCTT ATCGCACAGA
  Y
  GAATGCAAAC TTGCCACACT AACCACAGGC GATCTGATTT TTCCCTCTTT TACTAATAAC
  TTTTTAGTTG TTAGTTTCTG TGAACATTAC ATTTTCTCAT TTGCTAAATT GATTTAATAT
  GTCTAGCTGT TCATTTGATT GCAATGAAGA CCAGGTGTGA AAATGTTTGT AGAAACTAAA
  CGGTGAAAAA AATGTTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss60436758	NES15940868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47417070					SNP	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436758	NES15940868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116389443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	262 bp distal
Rr397965	regulatory region 397965	730 bp downstream
Rr583746	regulatory region 583746	1323 bp distal
Rr583747	regulatory region 583747	1026 bp distal
Rr583748	regulatory region 583748	774 bp distal
Rr583749	regulatory region 583749	within coordinates
Rr583750	regulatory region 583750	584 bp distal
Sass6	SAS-6 centriolar assembly protein	within coordinates
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	763 bp downstream
Tssr35316	transcription start site region 35316	953 bp upstream
Tssr35317	transcription start site region 35317	896 bp upstream