rs47417982 SNP Detail

Summary

• ID
  rs47417982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69830640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACTCTT AGTGTTTTCT
  GTATAGATAC AATAAGAGGA TATAAAATTA CATCTTATTT TATTTTAAAC CCTTTCTTCA
  TGGGGCCATT TCCATAAAAG AATAGTCTTG TATTTGAGGG CACATGCCTT TGGAGCATAG
  AATAAAACCC AGCTAAGACT ACATAACTAG GATGTCCCAT TGTTAAAACT GAATTCTTGC
  Y
  GGGCGGTGGT GGCGCACACC TTTGATCCCA GCACTTGGGA GGCAGAGGCA GGTGGATTTC
  AGAGTTCAAG GCCAGCCTGG ACTTGAGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC
  CCTGTCTCGA AAATACAAAC AAGCAAACAA CAACAACAAA ACTGCACTCT TAGCAAATGG
  CTTGATTACC CCCTGCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323355495	CHEV_10_69457558	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47417982					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69830640 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Tssr93978	transcription start site region 93978	1693 bp downstream
Tssr93979	transcription start site region 93979	1510 bp downstream
Tssr93980	transcription start site region 93980	398 bp downstream