rs47417993 SNP Detail

Summary

• ID
  rs47417993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAGCATGG TGGGGTCTCG TAGCAGAAAT GGTGACTGTG
  GAGTCAAGGA CATGGGGTGG GGGGTTATAG GGTAGATATC TAACTTGGTT ACCACAAAGA
  R
  GTGGACCCAG TATTTGAAGG GGAGGGGGGC CAGTTATTAT GAGGCTGAGG TTCTGGTGAC
  TTAGAGGGGA CAGTCTACAC AAGTCCTCGG CAGCAGCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682350	ENSMUSSNP3660287	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322135221	CHEV_7_31339092	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47417993					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1422 bp distal
Cpgi18809	CpG island 18809	539 bp distal
Cpgi18810	CpG island 18810	153 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1368 bp downstream
Mir9769	microRNA 9769	1169 bp downstream
Proser3	proline and serine rich 3	1774 bp upstream
Rr400242	regulatory region 400242	1581 bp downstream
Rr644846	regulatory region 644846	1817 bp distal
Rr644848	regulatory region 644848	1311 bp distal
Rr644849	regulatory region 644849	795 bp distal
Rr644850	regulatory region 644850	572 bp distal
Tssr65779	transcription start site region 65779	1509 bp downstream
Tssr65780	transcription start site region 65780	801 bp downstream
Tssr65781	transcription start site region 65781	764 bp downstream
Tssr65782	transcription start site region 65782	699 bp upstream
Tssr65783	transcription start site region 65783	774 bp upstream
Tssr65784	transcription start site region 65784	798 bp upstream
Tssr65785	transcription start site region 65785	850 bp upstream
Tssr65786	transcription start site region 65786	868 bp upstream
Tssr65787	transcription start site region 65787	962 bp upstream
Tssr71787	transcription start site region 71787	1757 bp upstream
Tssr71788	transcription start site region 71788	1698 bp upstream
Tssr71789	transcription start site region 71789	592 bp downstream
Tssr71790	transcription start site region 71790	704 bp downstream