rs47418040 SNP Detail

Summary

• ID
  rs47418040
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:31124940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGCAGA GCACGAGGCT
  TGTGACCTGC TCATGGAAAT TGAGCAGGTC GATGTGCTAG AGAAGGACAT CGATGAGAAT
  GCCTACGCCA AGGTCTGCCT CTATCTCACC AGTTGTGTGA ATTATTTACC AGAACCTGAG
  AACTCTGCCC TCCTGCGCTG TGCCTTGCGC ATGTTCCGAA AGTTTAGCCG TTTCCCTGAA
  K
  CTCTGAGATT GGCACTGATG CTCAATGACA TGGAACTGGT AGAAGACATT TTCACTTCCT
  GCAAAGATGT GGTGGTCCAG AAGCAGATGG CATCCATGCT GGCTCGGCGT GGAGTGTTCC
  TGGAGCTGAG TGAAGATGTA GAGGAATATG AAGACCTCAC AGAAATCATG TCCAATGTCC
  AGCTCAACAG CAACTTCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61267506	NES16887490	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47418040					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61267506	NES16887490	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:31124940 () rs orientation: forward

Symbol	Name	Function Class
Gm5422	predicted pseudogene 5422	within coordinates
Gm63653	predicted gene, 63653	within coordinates