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rs47419968 SNP Detail
Summary
  • ID
    rs47419968
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:21335358 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGACTAAGTG TTGACCCTAC TTAGAAAGCT AACAAGTTTT
    CTAAGGCGTC TGTGTCAATT CAGGTAGACA TGACTGACGA GGAACGGCCG GATGCTCTCT
    R
    GTTGTAGTTA AAATTGAAAT CATGATCACT TCCTCGGATA TTTTCTTACT GTTCAATAAA
    ACAAAACAAG CTTCTTAGAC TCTGGAGTAT TCGAACATTG                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss60707911 NES16351408 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs47419968 SNP A A A A A A G A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60707911 NES16351408 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:21335358 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm28836 predicted gene 28836 within coordinates
Gsta3 glutathione S-transferase, alpha 3 within coordinates
Rr408399 regulatory region 408399 1807 bp proximal
Tssr6078 transcription start site region 6078 267 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory