rs47420742 SNP Detail

Summary

• ID
  rs47420742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53627743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCG TGCAAAAGTG TGCTCATGAG
  R
  TTTTTTTTTT TTTTTTTTTT TTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149017767	ENSMUSSNP2590158	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47420742					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53627743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	551 bp distal
Cpgi5624	CpG island 5624	1899 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	927 bp upstream
Rr281405	regulatory region 281405	542 bp distal
Rr281406	regulatory region 281406	1457 bp proximal
Tssr122586	transcription start site region 122586	982 bp upstream
Tssr122587	transcription start site region 122587	920 bp upstream
Tssr122588	transcription start site region 122588	897 bp upstream
Tssr122589	transcription start site region 122589	857 bp upstream