rs47420796 SNP Detail

Summary

• ID
  rs47420796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGAGCA TGGCTCTGGC
  AGGCCTTGCC CTTCCCTCCC ATTTCCTCTA CCTTTCTAAA AACCTTTGAT TAACATGCCT
  AAAGCTAGCC ACCAAGGTCT ATTCCCTTAT TTGGTCACTT CCTCCTGAGG CTGACTACCA
  AGGTCCAGCT ATCTAAATAT CGAAGTTTAA ACTTAAACAC CTTATCCTAA CTTGGGGTTT
  Y
  CCCTTGTACC TTTATAAACC GCCATTTTCC TATGTGCCAA GCCTATCTTC TCTCTATCCA
  GAGGCAGTCT TTTGTCCTCC AGGACAAATA CTTCTCCTCT CCTCTGTTCC CTTCTCCTTC
  CCCTTCATCC TCTATCTCCC GTATTTGTTC TTTATTCCGT GGCCCCTGGC TCTCTGGGGC
  AAATTAATCT CCTTTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728916	ENSMUSSNP4304155	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47420796					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028855 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	638 bp downstream
Rr387210	regulatory region 387210	1712 bp downstream
Rr387211	regulatory region 387211	1221 bp upstream