rs47421375 SNP Detail

Summary

• ID
  rs47421375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:48161641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGCTGT ACTTGGAGAG
  TACATTTACA ATTTTACTCA GCACCAAGTA TATTTAACAT CTATGAAACT AGAATCAAAC
  AACTGAGTTT AGCCACGGAG CAATTACAGC TTTACCATTT ACCTGGCGCC TTTAACAGTG
  ATACATGTAC TATCTACTAT GCTTCCAAAG TCTTGAAAAT CCCCAACAAC AGATTTCAAA
  R
  CTATTTCTTC TTTCACTACA CTGTACTAAT GAATAACTAT AAAATACATA TTTGTTTTAA
  ATCAGACAAC TTGAGTGTTC CTTTGCTTAC TTGTTAAGGT GTATATAGAA GGCTCTTTCC
  GTAACTCTCC ACCTTACAGA CTGAGGCTCC CTAGGACTCC CCGTTCTCCC AGTGCTGCAA
  CAGATGGGCC ATCACTGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60606902	NES16304515	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47421375					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60606902	NES16304515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:48161641 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2aip	CDKN2A interacting protein	738 bp downstream
Gm64835	predicted gene, 64835	1679 bp upstream
Rr663259	regulatory region 663259	1690 bp distal
Rr663260	regulatory region 663260	1252 bp distal
Rr663261	regulatory region 663261	20 bp distal