rs47422240 SNP Detail

Summary

• ID
  rs47422240
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165065833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGACCTA ATAAGGAGGT
  AAATGAGCAA ATTACATGCA ACGAAATCCA TCCTCTTTTC TTTCTGAAAG AGTTCCATAC
  AGCCAGCCTA GGCTAGCCTT CAATTCACTA TTGTAGCTAA GGAGGACCTT GAATTCCTGA
  TTGTTCTGCT TCTTCCCAAG TGCCGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  K
  TTTCACCAAG CCTCCAACAT TCTTACTATA TGAAGTCTTC CTTTGAATTT TTCTGCATTA
  GGCCAAGAAA AAAATGTATA GAATCTCTGT GATTTTTGAA AACAGCCTAG TCTACATAGC
  AAATTCCAGG CCTATGTATT CCTTGTTTCA ATAAACAAAC AAATGTGCCT CTTGTTCTTT
  CAGCATAGGT CATGGCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320086590	CHEV_1_167168395	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47422240					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165065833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	855 bp distal
Rr372385	regulatory region 372385	266 bp downstream
Rr422343	regulatory region 422343	1332 bp distal
Rr422344	regulatory region 422344	1722 bp distal
Rr422345	regulatory region 422345	831 bp distal
Rr422346	regulatory region 422346	1304 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	1268 bp upstream
Tssr9804	transcription start site region 9804	1757 bp downstream
Tssr14765	transcription start site region 14765	1308 bp upstream
Tssr14766	transcription start site region 14766	1273 bp upstream