rs47422313 SNP Detail

Summary

• ID
  rs47422313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:47584657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGG CTAGCTACCC TGTATGAGTT
  Y
  TGTGTCCTCT GGAAGAGCAC TACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136436952	ENSMUSSNP5183761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322947664	CHEV_9_47481442	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47422313					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:47584657 () rs orientation: forward

Symbol	Name	Function Class
Cadm1	cell adhesion molecule 1	within coordinates
Rr209331	regulatory region 209331	1257 bp distal
Rr209332	regulatory region 209332	945 bp proximal