rs47423224 SNP Detail

Summary

• ID
  rs47423224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90403430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCTCAGAC TCACAATCCT CAGTAGGGTC TCCTTATGTA
  GCCCAGGCTA GCCTCAAGCT CACCACCATC CTCTTGCTGC ATTGCCCCAG TGCTGGCGTT
  W
  CAGGGATATA CCACCGTTCA CGGGAAAGGC AGGGGTGGGA GGGCATTTTT TATTATGTGG
  GGGAAAAGAC AAGCTGTAGA CTCATGTTTC TGCTCAGATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60906961	NES15948673	PERLEGEN	MM_PANEL2	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs47423224					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906961	NES15948673	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90403430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				Noncoding-Transcript-Variant
Cpgi17720	CpG island 17720			1930 bp proximal
Gm53295	predicted gene, 53295			1090 bp upstream
Rr634196	regulatory region 634196			1580 bp proximal
Rr634197	regulatory region 634197			1937 bp proximal
Tssr62021	transcription start site region 62021			1953 bp downstream