rs47423840 SNP Detail

Summary

• ID
  rs47423840
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85706743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA CAGGCTGGAG TCCGTGAATT
  G
  GATTGGGGGC GGGGCACCCC CCCCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322752781	CHEV_8_87504013	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47423840					SNP	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss145398719	ENSMUSSNP6126585	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85706743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	1068 bp distal
Cpgi20739	CpG island 20739	8 bp distal
Junb	jun B proto-oncogene	1366 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	1892 bp downstream
Rr401033	regulatory region 401033	1155 bp downstream
Rr401034	regulatory region 401034	within coordinates
Tssr78495	transcription start site region 78495	1943 bp downstream
Tssr78496	transcription start site region 78496	1509 bp downstream
Tssr78497	transcription start site region 78497	1485 bp downstream
Tssr78498	transcription start site region 78498	1127 bp downstream
Tssr78499	transcription start site region 78499	73 bp upstream
Tssr78500	transcription start site region 78500	89 bp upstream
Tssr78501	transcription start site region 78501	237 bp upstream
Tssr82221	transcription start site region 82221	1998 bp upstream
Tssr82222	transcription start site region 82222	1971 bp upstream
Tssr82223	transcription start site region 82223	1651 bp upstream
Tssr82224	transcription start site region 82224	1574 bp upstream
Tssr82225	transcription start site region 82225	1390 bp upstream
Tssr82226	transcription start site region 82226	883 bp downstream
Tssr82227	transcription start site region 82227	940 bp downstream