rs47424341 SNP Detail

Summary

• ID
  rs47424341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45227826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCTTGAT GTCACTGTCA GGAGCACACA TAGATGCTCC
  TCATTCTGTA GCTGTGCACT TTGTGAGCAC ATAGATAAAT TCAGTAACAG CTGGAACATC
  K
  CAGGGATGAG GGAAAAGGTT GCTTGGGGAA CTGAGGCAGG GCCAGGATAG AAACATGGGT
  GTTGCTCAGT TAGAGGCAGC ATTGACAGTG AGATCTGAAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62358651	NES17228892	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47424341					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358651	NES17228892	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45227826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	517 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	483 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491041	regulatory region 491041	39 bp distal
Tssr4380	transcription start site region 4380	1557 bp upstream
Tssr125201	transcription start site region 125201	1897 bp downstream
Tssr125202	transcription start site region 125202	1758 bp downstream
Tssr125203	transcription start site region 125203	1697 bp downstream
Tssr125204	transcription start site region 125204	1450 bp downstream
Tssr128221	transcription start site region 128221	690 bp upstream
Tssr128222	transcription start site region 128222	499 bp upstream
Tssr128223	transcription start site region 128223	443 bp upstream