rs47425699 SNP Detail

Summary

• ID
  rs47425699
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCACTCC AGATCGCAAT CAGAGAGTGC AAGGCAGGAG
  GAACTTTCAA AATGGGTCTG TAACTCCAAC AGCCCTATTG TGGGGCACCG CCCCAGCAAG
  A
  GGGAGGCAGA TCCTCTCTGG CTGCAGCCAC GGGGCAAGAG CACCAGCCCC CTGTCACTCC
  CTTGCACCAA GAATCCAATT CCAGGAAGTC TCTCTTCCC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147525919	ENSMUSSNP687652	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321346950	CHEV_4_133898449	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47425699					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	388 bp proximal
Rr601645	regulatory region 601645	157 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	647 bp upstream
Tssr39548	transcription start site region 39548	609 bp upstream
Tssr39549	transcription start site region 39549	664 bp upstream
Tssr39550	transcription start site region 39550	959 bp upstream
Tssr39551	transcription start site region 39551	989 bp upstream
Tssr39552	transcription start site region 39552	1064 bp upstream
Tssr39553	transcription start site region 39553	1098 bp upstream
Tssr39554	transcription start site region 39554	1149 bp upstream
Tssr39555	transcription start site region 39555	1348 bp upstream
Tssr39556	transcription start site region 39556	1468 bp upstream