rs47426525 SNP Detail

Summary

• ID
  rs47426525
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122066227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGAGATC CACCTGCCTC TGCCTCTCAA CCCCTGGGAC
  TAAAGGTGTG CACCACCACC CTGCTATTTT GGCTTTTTAA AGAAAATACA AAAACAACAA
  M
  AAAAAAAAAA ACCTTGCAAA TATTTGAAAC ATAAAAAACT GAACAAAATT TTCTGAATTT
  GTGCTTCAAA AGATAGTGTG AAGATAATGA AAAGACAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135737957	ENSMUSSNP4443529	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47426525					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122066227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	1445 bp proximal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	1818 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584272	regulatory region 584272	763 bp distal
Rr584273	regulatory region 584273	1320 bp proximal
Rr584274	regulatory region 584274	1821 bp proximal
Tssr31491	transcription start site region 31491	1793 bp upstream