rs47427560 SNP Detail

Summary

• ID
  rs47427560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15146851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTCACC AGAGTGTTAC
  ATTTTTTCAC AAAATAACTC AGGAATGTGT AAACAACATA TTTTCTATCC AAGAAAAAAG
  AACCCAACTG CAGTTAATCT TTTTTTAAAG CTATGTTTCA AAGAAAAACA GGCATGTTAA
  CGCCTCTCTT GTGGAATCAG GTTTTTTGGT TTTTGTTTTT CTGGGTTTTT TTGTTTTTGT
  W
  TTTTCCAATT CTGGAACTAG ACTTAAGAAG GTAAGGGAGC CAGCCCTGTT TATAGATGAA
  AGCTCCATCA GGACAGGGAA CTTACATTAA AAGAACTTGG GAACAACTGC ACCTACATAA
  TAAGATGAGA TTTAAAATTT TGCTTTTAAT AACCTGCTGT TGAACACGTG AGCTTAGAAT
  GGTAAGTCTG TCGGGTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146047754	ENSMUSSNP3276116	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321047383	CHEV_4_15073998	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47427560					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15146851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1925 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	841 bp distal
Rr100616	regulatory region 100616	749 bp proximal