rs47428645 SNP Detail

Summary

• ID
  rs47428645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18515894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAGTTAGT AATATCAACT TGAAATAGGG TGGGATATAA
  CATAAGTGGT AATTTTTAAA AGCAGGTTAT TCACTGAGTT ATATAGCTTA TACATCCCCA
  Y
  AAATTGATCT TAATAATTCC AAGCTTGATA GTACAACTTT AGATATCAGA AACTTTGATA
  CTATTTCTCA AACCACAACT TGAAAAACAA ATTATCCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134658357	ENSMUSSNP430778	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47428645					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18515894 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	386 bp upstream
Gm65525	predicted gene, 65525	within coordinates
Rr573905	regulatory region 573905	1071 bp distal