rs47429221 SNP Detail

Summary

• ID
  rs47429221
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGCGAGGTC TCCGGGCTGC AGGAAAAGCA AGGTTTTCTC
  CAGGTAGAGT GCCAGGCAGG TGGGACTTCA AAGGCAGGGC ACGCTGCACA CATATAACCC
  C
  AGCTTCTTAG GAAGGCTGAG GCAGGAGGAC CACAAGGTCA AGATCAGCTT GGGCTATATA
  GCAAGACAGG CTTTAAAGAC AAAGTAGCAA GATTTCGTTG G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144899220	ENSMUSSNP3285409	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47429221					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191744 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1733 bp downstream
Tssr12870	transcription start site region 12870	796 bp downstream