rs47430533 SNP Detail

Summary

• ID
  rs47430533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29150437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCATCAGA TCTCATTACA
  GATGGCTGTG AGCCACCATG TGATTGCTGG GAATTGAACT CAGGACCTCT GGAAGAGCAG
  TCAGTGCCCT TAACCGCTGA GCCATCTCTC CAGCCCAGTC ATATTTAACT TTACGGACAT
  TCCACAAAGA TGTCCCCTGT GTGGAAACTG GGATGTCTCT GGGGACATTG CTCCAGGGAA
  R
  GAGGCTTGGG AGCAGCCACA CACACCAAGA GCACGTATTC CATAAATATT AGTTATTATT
  AGGATTGCTC AGACACACTG GTTTTCAATA GTCACTTCAA ACCTTTGTCA GTTTAGAGGG
  ATGGACTCAG CTCCATGCTT TACTCTTATA TTTCTGATCC AAAGGTGACT CACAAGTACA
  AGAATTCTTG AGCTGGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559596	NES16576373	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47430533					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559596	NES16576373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29150437 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	16 bp downstream
Rr524716	regulatory region 524716	835 bp distal
Rr524717	regulatory region 524717	910 bp distal
Rr524718	regulatory region 524718	within coordinates
Rr524719	regulatory region 524719	191 bp distal
Rr524720	regulatory region 524720	155 bp proximal