rs47430851 SNP Detail

Summary

• ID
  rs47430851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89719566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTACAT CCTACCTCTT
  CACACCCCTG AGCACAAACC ATTGCTTAAG AGCAGTGGGT GAACTAGGTG GCTTCGAATG
  TGACAATGTA TGCTTCCTGC TGCTAGAGTA ACTCAATTCT AAATCCTGGT GTCTACATTG
  TTTCTTCTTA GTTGCTAAGG CGACTCAAGA AAGGCAAAGA GGGGATCAGG GACCCACAAA
  Y
  ATAAGATTAT GAAGGAAAAG AAAAGGACCA GGGAACACTT CAAGATTAGA AGCTAGTTTC
  CTGCCAGAGC TTCGCTTCAT TTCATATAAC TCGCCCACAC TCTCTCCAGT TTCCAAAGAC
  CAACTGCAGG CTCTTCTCCT GTGTCAGCCT CCAGTTCTTG GTGCTGAATA AAAAGAACTA
  AAAGAAGGGC GATAAGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61031864	NES16094521	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	C	T
ss145292127	ENSMUSSNP2733040	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47430851					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031864	NES16094521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89719566 () rs orientation: forward

Symbol	Name	Function Class
Tssr2327	transcription start site region 2327	1302 bp upstream