rs47430942 SNP Detail

Summary

• ID
  rs47430942
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119768167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTTTTCT TACCTTATTC CTGATAGAGA TGTGAGAAGG
  TGCATTCTAT ATGAAAGGAA AAGGAAGTTG ACATGGAAAT CAAGGAAAAT ACAATAGAAT
  T
  ATGGGGCAGG GCAGGGCGAG ACATAAGCCT GCTAGAGATG ATAAGTCAAT TTGGGTTAAG
  CAATGACAGC AAGAGGGAGA GGCTGGTCAC TTGCCGGTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147338398	ENSMUSSNP1719039	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47430942					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119768167 () rs orientation: forward

Symbol	Name	Function Class
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr84724	regulatory region 84724	1567 bp distal
Rr91833	regulatory region 91833	233 bp proximal
Rr102092	regulatory region 102092	1313 bp proximal
Tssr38760	transcription start site region 38760	889 bp upstream