rs47430961 SNP Detail

Summary

• ID
  rs47430961
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAAGTG CTTAATTCAA
  AGTCACCAAG CCCTTGGAAC CCCCTGTCTC TGCCTCCACT GCACAGGGTT ACAGCTGCAC
  ACTACCTCGC CTGGCTTTTG TTTGTTATGT TTGTTGTATC GGTGTTTTGC TTGCATGAGT
  GTCTGTGCAC TGTGCCCATG GAGGCCCAGA GAGGACATCA GAGCCGCTAA AACTGGAGTT
  W
  CAGACAGTTG TGAGCTCCAC ATAGGTGGTG GGAAGGGAAC CTGTATCTTC TGTATGAGCA
  ACACGTGCTC TTAATTGTAG AACTCTCTCT CCAACCCTCG ATTTTTGTTT TGTTTCGTTT
  CATTTTGTAT TGTATTGTAC TATGTAGGTG CTGGAAATGC AAACTCAGGT CTTCATGTTG
  GCATAGTGAG CACTTAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148206276	ENSMUSSNP5320530	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47430961					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436650 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	260 bp downstream
Rr569427	regulatory region 569427	374 bp distal
Rr569428	regulatory region 569428	300 bp proximal