rs47432345 SNP Detail

Summary

• ID
  rs47432345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTGGA TTTCTGAGTT
  CCAGGCCAGC CTGGTCTACA GAGTGAATTC CAGGACAGTC AGGGCTACAC AGAGAAACCC
  TGTCTCGAAA AACCAAAAAA AAAAAAAAAC AAAAAAACAA AAAAACCTCA GTTTTCTCAT
  CTAGAAATTG AGCTAAGAAC CTTGGGGTTT GTAGTAAGTA TAGGAGCTCA TGCTTCCATG
  Y
  ATAACAGGTC CTACATGGCC TACGGAAGCT CCTGTTCCTT TGTCTCCTCC AGCTCTCGTG
  GCTCTAAGCC AGCCCAGAGT GCAATGCCAT GCTTCTCGGT ATCCCGTGGC CGTGGACTGC
  TCCTGGACTC CTCTCCAGGC TCCCAACTCC ACCAGATCCA CGTCCTTCAT TGCCACTTAC
  AGGTCAGAAA ATGGAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801960	NES17366686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47432345					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801960	NES17366686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260836 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	935 bp downstream
Rr340009	regulatory region 340009	635 bp distal
Tssr145247	transcription start site region 145247	1137 bp downstream
Tssr145248	transcription start site region 145248	1111 bp downstream
Tssr145249	transcription start site region 145249	1097 bp downstream
Tssr145250	transcription start site region 145250	1078 bp downstream
Tssr145251	transcription start site region 145251	1054 bp downstream
Tssr145252	transcription start site region 145252	1040 bp downstream
Tssr145253	transcription start site region 145253	1022 bp downstream
Tssr145254	transcription start site region 145254	998 bp downstream
Tssr145255	transcription start site region 145255	974 bp downstream
Tssr145256	transcription start site region 145256	58 bp upstream
Tssr145257	transcription start site region 145257	482 bp upstream
Tssr145258	transcription start site region 145258	504 bp upstream