rs47434321 SNP Detail

Summary

• ID
  rs47434321
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32690331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTCCAA GAAGGGAGTC TCACCTTAGC TGTAACTGAG
  TGTTGTCAAA TGAACACTGG GACTTTTGGT TGCCAGCTAA TACAGTATTG CTTTGTTTCC
  G
  AAAAAAAGCT AGAATCTGCC CCTAAAGGTA TAATTAACTA CACTTCTAAA TTCTGCCAGA
  CTATTGTTCA GACCAAGGAA AGCTTGACTC TAGGCTGAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147954723	ENSMUSSNP3381928	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47434321					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32690331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	1550 bp distal
Rr323396	regulatory region 323396	375 bp proximal
Rr325218	regulatory region 325218	930 bp distal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140828	transcription start site region 140828	1681 bp upstream
Tssr140829	transcription start site region 140829	1643 bp upstream
Tssr140830	transcription start site region 140830	1593 bp upstream
Tssr140831	transcription start site region 140831	within coordinates