rs47434532 SNP Detail

Summary

• ID
  rs47434532
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATAGAC AGTTATTTTG
  TACTCCAAAG ACTTACCACA TTTATTTCCT TCTAAAAAAT TAAGGGTATC ACTTTCTTGA
  CCCAGATATA GGCAGGGATA GCATATGGAG AAAATGTGGG CCTTGATGTC CTGAGAAAGA
  TGTCTTAGCA TGACTCCACT TTTTATTTGC CCTAAGCCTT ACAAATATCT TGCCTCCTCT
  M
  TAGCAGAATC TGTCCTTCTG GGGCCCCAAG TTCATTACTA TTCACTTGCT ACTATGGCTA
  GGGACACCTA AAAATAAAAG GACAAATTTT CCTTTTCATC AAAGTGGGCT GTGACTTACC
  AGTAGCCAGA AAAGGCATTA GCATCCCTAA CCCAAGAACA CATTAGATCT GAAAACCAAC
  TCTCAAATGT AGTAGCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61805372	NES17736148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47434532					SNP	C	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805372	NES17736148	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1524 bp proximal
Gm33763	predicted gene, 33763	1690 bp upstream
Rr388456	regulatory region 388456	426 bp upstream
Rr480050	regulatory region 480050	1259 bp proximal
Rr480051	regulatory region 480051	1650 bp proximal
Rr480052	regulatory region 480052	1743 bp proximal