rs47436171 SNP Detail

Summary

• ID
  rs47436171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69311702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAGTAT GGCTTTTCTC
  CTGGGAAGAT CAAGTTCGTC ACAGTATTTG AAAAGTTTAG CCAAGAGTAA ATGAGAAAAG
  TAAAGAGCTG TTCATGGAGA AATAAAAATC TTCCTTTATC TAAAATTAAA CATTCTGATT
  AGAGATCCTT ATCATTGAGT TTAAAGCCAA CAAGTGACTG GATAGTTTTG AATTTGATGA
  R
  GAGATATAGT TGCTGTTAAT CTGATTAATA TAAAAGAAAA CTAAACTACA AGATTTAGGT
  AGACTTTGAG ATGGAGCCCA GAAATATCAT TTCCAAATGT GGTTCTTAAA GAAACTGCCA
  AACTAGTCAA CTTAAGAGTC TCGCAAACTA CTTGGAACCT TCTTTTATTT CATAGCAACT
  TGAAGTAAAA AGGAAAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61416490	NES16802497	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47436171					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416490	NES16802497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69311702 () rs orientation: forward

Symbol	Name	Function Class
Ice2	interactor of little elongation complex ELL subunit 2	within coordinates
Tssr85856	transcription start site region 85856	580 bp downstream