rs47436329 SNP Detail

Summary

• ID
  rs47436329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84824755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTCAC CTGGTCTGTC
  CTTTGACCTC AGTTAGATCA CCCACGCTGA CTGTCTCAAA GATGCCTGTG TTGAGGTCCC
  AGGCCACCTT GAGACTGGTG TGATAGGTCT TGGGTCTGTG GTGGTGGAGG ACAAGAGGGT
  GGTGGGCTGG TAAGTCCCTT GCACTGGCTC TCACTGCCCC AGTGACAGCA CGGGCTCTTC
  R
  GGTTCTATCT GTTCACCCTG CACAGAAGAG TCTGGCCCCA CATAAGGTTC GCCAAAGGAC
  CCTACCACTC ACCGAAGCTG GCCCTCTTCA GTGGGAGCTG GAAAGGCCAA GAGCAGCAGG
  CCAATGTTGA TCAGGACCTG GTTGGTTTCT GGGCAGACCT GGGAGCAGGC AGTGACAGTT
  AGACAGAGAT CCTAGAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60642562	NES16272408	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47436329					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642562	NES16272408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84824755 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	within coordinates
Gm39210	predicted gene, 39210	within coordinates
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	1134 bp downstream