rs47436557 SNP Detail

Summary

• ID
  rs47436557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80142461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA CTGAAGCTGT TAGTTCTGGG
  Y
  GCCTATTAGC TGGCAGAGAA CGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148216351	ENSMUSSNP6165752	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss325030596	CHEV_15_80088690	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47436557					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80142461 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	719 bp downstream
Cpgi7369	CpG island 7369	1907 bp distal
Rr505934	regulatory region 505934	396 bp distal
Tssr132204	transcription start site region 132204	1911 bp downstream
Tssr132205	transcription start site region 132205	1340 bp downstream
Tssr132206	transcription start site region 132206	1125 bp downstream
Tssr132207	transcription start site region 132207	1074 bp downstream
Tssr135434	transcription start site region 135434	719 bp upstream