rs47437849 SNP Detail

Summary

• ID
  rs47437849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTACAAAAG ACCTTGCCCA AAAAGACAAG GGGTCATGGC
  ATGGCTGCGT TGGCCTATAC TAATACCGTT CTCTGGAAAG CAGAGGCTAA ACCGGAGGCC
  R
  TTTTTGGCCA CTTAAGAGTT GCAGGCCAGC CAGGCCTACG AAGCATGAGT CTATCGCAAA
  AATAAAAAAT AATAAAGTGG GGGAGGGAAG TGCTACCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145361180	ENSMUSSNP1167893	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322745687	CHEV_8_86265779	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47437849					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468509 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	697 bp upstream
Cpgi20655	CpG island 20655	190 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1742 bp downstream
Rr666301	regulatory region 666301	620 bp distal
Rr666302	regulatory region 666302	511 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	336 bp proximal
Tssr2618	transcription start site region 2618	1767 bp upstream
Tssr2619	transcription start site region 2619	1479 bp downstream
Tssr2620	transcription start site region 2620	583 bp downstream
Tssr2621	transcription start site region 2621	675 bp upstream
Tssr78291	transcription start site region 78291	1524 bp downstream
Tssr78292	transcription start site region 78292	1502 bp downstream
Tssr78293	transcription start site region 78293	1361 bp downstream
Tssr78294	transcription start site region 78294	1306 bp downstream
Tssr78295	transcription start site region 78295	1260 bp downstream
Tssr78296	transcription start site region 78296	1241 bp downstream
Tssr78297	transcription start site region 78297	446 bp downstream
Tssr82049	transcription start site region 82049	1810 bp upstream
Tssr82050	transcription start site region 82050	1722 bp upstream
Tssr82051	transcription start site region 82051	1448 bp upstream
Tssr82052	transcription start site region 82052	690 bp upstream