rs47438280 SNP Detail

Summary

• ID
  rs47438280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13870756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTATATCC CCAAGCAAGC
  ACAGATGCCG GTAATGCTGA GAACCACACC TAATAAGAGT GCAATCGCGT CTCCAGCTTC
  CACTGCTTCA ACAACAGGCA GGATCAAAAG CAGCGAAGCG AGGACTAAGA TCAATTGCGT
  TGAAACTGAA TTCATGATGC TAGGATCTGG AGGGCTGAAC TTGCCTAGAA GTTAAACACC
  R
  AACAAAAGAA ACTGTTAAAA AAAAAAGCCT TATTTTTTTT TTTTTGAATG ACAATATTAA
  TATAAAACAA TCTTTTAGAC TGGAATTTGT GAATCATTTC AGATGTCAGT TTAAGATGAC
  AAAACTAAAG ACAGTCATTT TAGGTTATCA TTAGAAAAGA GAGGGAAAAA TGCATAAGAT
  ACTTGCCAAA TAAAATACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440997	MGP_WTSI_6_13820757	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs47438280					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440997	MGP_WTSI_6_13820757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13870756 () rs orientation: forward

Symbol	Name	Function Class
1110019D14Rik	RIKEN cDNA 1110019D14 gene	812 bp upstream
Rr378964	regulatory region 378964	within coordinates
Smim30	small integral membrane protein 30	within coordinates
Tssr54958	transcription start site region 54958	760 bp upstream
Tssr59853	transcription start site region 59853	316 bp downstream
Tssr59854	transcription start site region 59854	410 bp downstream
Tssr59855	transcription start site region 59855	702 bp downstream
Tssr59856	transcription start site region 59856	720 bp downstream
Tssr59857	transcription start site region 59857	930 bp downstream
Tssr59858	transcription start site region 59858	1527 bp downstream
Tssr59859	transcription start site region 59859	1548 bp downstream
Tssr59860	transcription start site region 59860	1562 bp downstream