rs47438859 SNP Detail

Summary

• ID
  rs47438859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:39297316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT GACATATTGT ATTAAATGAG
  K
  CAAACTGGAT TTATGCTCAG TATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52544931	NES15622776	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47438859					SNP	T	T	T	T	T	G	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52544931	NES15622776	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39297316 () rs orientation: forward

Symbol	Name	Function Class
Rims2	regulating synaptic membrane exocytosis 2	within coordinates
Tssr131153	transcription start site region 131153	377 bp upstream
Tssr131154	transcription start site region 131154	403 bp upstream
Tssr131155	transcription start site region 131155	431 bp upstream
Tssr131156	transcription start site region 131156	647 bp upstream