rs47438941 SNP Detail

Summary

• ID
  rs47438941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97276157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATTTTTTT TTTTTTTCAA
  AAGAATCGTA GTATTAGGCA TTAGTGTGAG GGATCATAAA GCCACAGGCC AGCAAGGCCA
  TCTCAACTCT TGCCTAAGCA GTACTTGAGG TCACCTGGAA CACACTTTGA AGGGCAGGCA
  GGCATCTTCC TGGTTCAAAT TTCCATTTAT GTCACAAGTG TCAACCAGGT TAAATGTGCA
  R
  GGTGACAGCT GTCAAGGCCC TGACACACAC TGGAAACTAG TTTTTTTTTT TTTTTTAATA
  ATTAGACCAA AGGGCTGAGG CCTGGTAAGC AGGTAGCGCC ACCTGGGAGG AGGAGACTGG
  GTCCTGCCAG CGGTTCCCCA GCAGTGGTTT CTTTATAACC ACATGTAACC ACATTCTTCA
  CAGGACTTTT ATGTATTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63608339	NES17040051	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47438941					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608339	NES17040051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97276157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	965 bp distal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	230 bp downstream
Tssr132866	transcription start site region 132866	1574 bp downstream
Tssr132867	transcription start site region 132867	1101 bp downstream
Tssr132868	transcription start site region 132868	1080 bp downstream