rs47439467 SNP Detail

Summary

• ID
  rs47439467
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG CAGACACAGG CAAGAAGAGG
  G
  TTAAGAGGCA TAGTGAAGAG GGGTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132512983	ENSMUSSNP5288192	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323773676	CHEV_11_87610573	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47439467					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687897 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	899 bp distal
Rr453905	regulatory region 453905	845 bp distal
Tssr3632	transcription start site region 3632	1803 bp downstream
Tssr3633	transcription start site region 3633	732 bp downstream
Tssr103990	transcription start site region 103990	1844 bp downstream
Tssr103991	transcription start site region 103991	1771 bp downstream
Tssr103992	transcription start site region 103992	1753 bp downstream
Tssr103993	transcription start site region 103993	1279 bp downstream
Tssr103994	transcription start site region 103994	1197 bp downstream
Tssr103995	transcription start site region 103995	1028 bp downstream
Tssr103996	transcription start site region 103996	978 bp downstream
Tssr103997	transcription start site region 103997	808 bp downstream
Tssr103998	transcription start site region 103998	663 bp downstream
Tssr103999	transcription start site region 103999	245 bp upstream
Tssr104000	transcription start site region 104000	357 bp upstream
Tssr104001	transcription start site region 104001	387 bp upstream
Tssr104002	transcription start site region 104002	413 bp upstream
Tssr104003	transcription start site region 104003	486 bp upstream
Tssr104004	transcription start site region 104004	512 bp upstream
Tssr104005	transcription start site region 104005	536 bp upstream
Tssr109976	transcription start site region 109976	637 bp upstream
Tssr109977	transcription start site region 109977	274 bp downstream
Tssr109978	transcription start site region 109978	302 bp downstream
Tssr109979	transcription start site region 109979	354 bp downstream
Tssr109980	transcription start site region 109980	542 bp downstream