rs47439922 SNP Detail

Summary

• ID
  rs47439922
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46387373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGTCAT GAGAAAAACG
  GGGCTGACCT TGCCATACTG TTTGCTCTGA TCTTGTTTAA GTGTGAGGGA AAGTCCCTGT
  GCAGAATAGG GGGCACCTGG TTTTATGTCA CCTACATGGT CATCAAGACA GAGTTGCCTG
  TTAGAGGTAT GGAAGCAAAG ACCAAGGGTA GTTATACTAT TTTCTTTCTG TTATAAGCTT
  K
  CAGTGAGGCT GTATCCCCAG AAGTAGACCA GAATGTGGTA ACAAATGAAA AGGCATGTAC
  AACACTTTGT GAAGTAAGAA ATGCTACCTA GATGCAGGAA TCTAAGAGGA ACCAGCTTAG
  GAACTGGTTC TTTCTAAGAC TCAAAGGGAG TTGCAGAATT GAGATACTGA AGTTTATTCC
  TATCCCTCAT GTGTAGGATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60312979	NES15818162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47439922					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312979	NES15818162	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46387373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	1509 bp distal
Rr548730	regulatory region 548730	1898 bp distal
Rr548733	regulatory region 548733	1352 bp distal
Rr548734	regulatory region 548734	1310 bp distal
Rr548735	regulatory region 548735	1063 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1935 bp downstream
Tssr156754	transcription start site region 156754	1901 bp downstream