rs47440767 SNP Detail

Summary

• ID
  rs47440767
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTCCCA CTATGTAGCC
  TGGGCTGTCA TGGAACTTGC TATGTAGTCC AGGCTAGCCT CAAACTTGCT GCCATCTTCC
  TTCTGTTTCC CAGGTGCAAA GATTACAGGA ATACATCACC ACACCCATCA ATAGCAAAGA
  TATTTGTCTG TCTTGTTCAT GGCTGTCTGG CACACGCATG AATCCACGCT GAATACACAG
  W
  TGAAGGGGTG ATGTGGGCAT GTCTATGTCA TCAGTGGGGG TTCAATAAGC AGGAAGGGGG
  GATATCAGAG GGGAAGAATC AGGATGACCA AATGGAGCCC CTGCTGGTCT ACAACTGCTC
  TTAAGTTGTA TAAGTGAATC TATAGTGACC AGAAGATCTG CCCCACTGAG CCCAGCCTTA
  ATTTCAATTT TGAAAATTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696851	ENSMUSSNP195537	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss322138589	CHEV_7_31821071	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47440767					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735477 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	791 bp upstream
Gm71772	predicted gene, 71772	937 bp upstream
Tssr2191	transcription start site region 2191	567 bp upstream
Tssr65830	transcription start site region 65830	784 bp downstream
Tssr65831	transcription start site region 65831	936 bp upstream
Tssr65832	transcription start site region 65832	1356 bp upstream
Tssr65833	transcription start site region 65833	1753 bp upstream
Tssr65834	transcription start site region 65834	1807 bp upstream
Tssr71891	transcription start site region 71891	405 bp downstream
Tssr71892	transcription start site region 71892	966 bp downstream
Tssr71893	transcription start site region 71893	1808 bp downstream
Tssr71894	transcription start site region 71894	1829 bp downstream
Tssr71895	transcription start site region 71895	1842 bp downstream
Tssr71896	transcription start site region 71896	1872 bp downstream