rs47440992 SNP Detail

Summary

• ID
  rs47440992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77959409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTTAGA AATGAACAGA
  ACTTGCAGGA CCTGAGCCAG AGCTGACACT TGTATGACAC CTGGACAAGA AGCTGACAAG
  AAGGACAGAC TCGGGAGCAC TGAAGGCGGA CAGGGTGAGT TGTGTAGCCA TGGCCACAGG
  CTTTATTTGT TCTAGGTCAT GGTCTGTAAA AATGATGGAA GCTGAACACG CCTTGGTCAC
  R
  ACTCTGAAAT AAAAGGAAGT CTTGAAAAAT TTAGACCTTT ATTTTAATCC TGGGGAAAGA
  TTGAGTTTAC TTACTGACGG GATAAAGCAG GTTTTCCCCA ATGTCTTGTT CTTAGTTTTT
  AGGGAAATAC TAAATTAATC CTCACTTCAT AAAAGTATGT GTTGGAGAAA AGTCTCTTTA
  AAGTTTTTAA AATTATTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61428320	NES16810789	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323015298	CHEV_9_77899934	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47440992					SNP	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428320	NES16810789	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77959409 () rs orientation: forward

Symbol	Name	Function Class
Gcm1	glial cells missing homolog 1	within coordinates
Tssr86256	transcription start site region 86256	179 bp downstream