rs47441434 SNP Detail

Summary

• ID
  rs47441434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTCCAAGGAT TTAGAGCCAT GATGAACAGA TAGCCAATAG
  TGCCCATGGC CCTTAGACTA GGGCCATTTT CCTCATGGGG TGGATTCAGA CATGACAGGT
  R
  AGGAGGGGGA TAGCAGATGT AACTCTTCAA CCCGGTAGAA AAGAACCAAG GCTGCAAACA
  TGACATACAG CAATACTTCT GGAGCCGCAG CGCCTGAGAA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251711	ENSMUSSNP281492	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47441434					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	708 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1035 bp upstream
Tssr37060	transcription start site region 37060	1049 bp upstream
Tssr37061	transcription start site region 37061	1061 bp upstream
Tssr37062	transcription start site region 37062	1094 bp upstream
Tssr41531	transcription start site region 41531	946 bp downstream
Tssr41532	transcription start site region 41532	1052 bp downstream
Tssr41533	transcription start site region 41533	1138 bp downstream
Tssr41534	transcription start site region 41534	1256 bp downstream