rs47442137 SNP Detail

Summary

• ID
  rs47442137
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77039816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAAGAA AGTAGTAATT
  CTTAAAAGTT AGCCTCTTAA AAGTCAAGGG AAGCCTGTCA TGTCTAAGCA ACTGTTAATA
  GAACAATGAG AGGCAGTTAG CAAGCAAACT GTGTGGGAAT GTGGAATAAT GACAAAGTTG
  GAAAAAAAAA ACTTTAAAGA GGATCATACA AGAAAGGAAG GAGAACTGGG AGACAAGAAA
  M
  CAGCAGTTGC CAATGCTGGG AATTACATCA GACAAATGAT AACAGTATAC ATCAAAGATT
  GACGGCTGGA GTTTCAAACA GGAAACAAAA GTGAACGCCA ACATTCAGAA AGGAGGAAAT
  GGCAGGGATG TAAAGGTGTG CCTGATGCTC TGTGTGTATA TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTTGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373171	NES15266565	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47442137					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373171	NES15266565	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77039816 () rs orientation: forward

Symbol	Name	Function Class
D10Jhu60	DNA segment, Chr 10, Johns Hopkins University 60	867 bp proximal
Rr384958	regulatory region 384958	837 bp downstream
Rr434428	regulatory region 434428	1657 bp distal
Rr434429	regulatory region 434429	87 bp proximal
Tssr94215	transcription start site region 94215	1795 bp downstream
Tssr94216	transcription start site region 94216	1769 bp downstream