rs47442431 SNP Detail

Summary

• ID
  rs47442431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25094636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGATGAA GGTCGATTGT
  CAAAGAGCAG ATGGATGGAT TCACTGAGAG AGTAAGAAGG GGCTGCAAGG AGCTCTTCCA
  ATTACCGGAT GCCCCTTCTG CCTACCTTTT GCATTCTATT TATTTAGAAA AAGCGGTTAA
  AAACCCTTCT ACGTTATTCT TTTAAGAGGG CAGAAGACAT GAAAACCGCT TGAACCGAAA
  Y
  AGAAAACACT AAAGGCACAG CTCTTGGCCA CACAGAAAAA GGAACCTGAG AGAGAACCTT
  ATTCCGACAG ACGAGCATTT CGGACACTTC CCCAAAGACC GCACTGGGAC AGACGTAGTC
  CTTACGTCTC GGTGGGGCAT TCTACTCTCA CATCACCCCC CCCCCCACGC GCAGGACGGC
  AGTGGATCAG TCCACGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60980649	NES16142659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47442431					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980649	NES16142659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25094636 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cpgi18601	CpG island 18601	42 bp proximal
Cpgi18602	CpG island 18602	772 bp proximal
Cpgi18603	CpG island 18603	1531 bp proximal
Lipe	lipase, hormone sensitive	within coordinates
Rr167273	regulatory region 167273	within coordinates
Rr400174	regulatory region 400174	365 bp upstream
Rr400175	regulatory region 400175	710 bp upstream
Tssr65124	transcription start site region 65124	904 bp downstream
Tssr65125	transcription start site region 65125	966 bp upstream
Tssr65126	transcription start site region 65126	1235 bp upstream
Tssr71238	transcription start site region 71238	322 bp downstream
Tssr71239	transcription start site region 71239	368 bp downstream
Tssr71240	transcription start site region 71240	399 bp downstream