rs47442528 SNP Detail

Summary

• ID
  rs47442528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16349466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TCGCCGTTGG CCAGCCCAAA
  R
  GAGTGGGCGG GGACAGGGGG CACGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322111625	CHEV_7_17200890	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47442528					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16349466 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	153 bp upstream
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	810 bp upstream
Rr400125	regulatory region 400125	within coordinates
Rr642706	regulatory region 642706	1707 bp distal
Rr642707	regulatory region 642707	559 bp distal
Rr642708	regulatory region 642708	58 bp distal
Rr642709	regulatory region 642709	432 bp distal
Rr642710	regulatory region 642710	1595 bp proximal
Rr642711	regulatory region 642711	1703 bp proximal
Tssr64615	transcription start site region 64615	66 bp upstream
Tssr70753	transcription start site region 70753	935 bp upstream
Tssr70754	transcription start site region 70754	918 bp upstream
Tssr70755	transcription start site region 70755	830 bp upstream
Tssr70756	transcription start site region 70756	753 bp upstream
Tssr70757	transcription start site region 70757	736 bp upstream
Tssr70758	transcription start site region 70758	681 bp upstream
Tssr70759	transcription start site region 70759	650 bp upstream
Tssr70760	transcription start site region 70760	520 bp upstream
Tssr70761	transcription start site region 70761	474 bp upstream
Tssr70762	transcription start site region 70762	403 bp upstream
Tssr70763	transcription start site region 70763	265 bp upstream