rs47443005 SNP Detail

Summary

• ID
  rs47443005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69689307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAACCCCAA CCCAAAAGAA GAGAGCTTCC TAACCCCCCA
  AAGGCCAAAG CCTTCCTGCC TCCATCTGCC ATAACAACAT CTTGTTGAAC ATTTATGGCC
  Y
  GCCCGAGCTA TGTGTCATTA AGTGTTCATG TCAAGGTCAA TGCCCTCCCA CGTGACCCAC
  CTTTTCTGGA GCCCATACCC ACCCTCCAGG AGCTTGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132361392	ENSMUSSNP3953958	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323731579	CHEV_11_69611983	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47443005					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69689307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3148	CpG island 3148	1663 bp proximal
Fgf11	fibroblast growth factor 11	within coordinates
Tssr108838	transcription start site region 108838	1302 bp upstream
Tssr108839	transcription start site region 108839	1098 bp upstream
Tssr108840	transcription start site region 108840	1456 bp downstream