rs47444146 SNP Detail

Summary

• ID
  rs47444146
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATTTCCAGCT TTTATTGACC ATTAATATTA ACCCTTCTCA
  GAAAAGAACC CAGGCTGATA AACTTTGACT TTTGGGAGAC TGTAGCTGGA TGGTTTTTTC
  M
  TTTTTTTTTT TTTTTTAAAG AAAAGTACTT CTATATTTTA TCACACACTT TTTGAGGGAT
  ACACTAAATT CCTTTTGTAA GTCCTTTACA AAAAATACTT C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135386129	ENSMUSSNP7062323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47444146					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1647 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1115 bp upstream
Gm65109	predicted gene, 65109	1798 bp upstream
Rr578673	regulatory region 578673	1384 bp proximal
Rr578674	regulatory region 578674	1809 bp proximal