rs47444643 SNP Detail

Summary

• ID
  rs47444643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACAAGTGT GGCTGCCACA CCTACCTGCC CACCACTTGT
  CCCCTGGAGA GAGGCCAGCG TGTCTGAATT CCGTGTTAGT TCTTCTTGGA AATCTGTGCA
  Y
  CGTACTGGTC ATGCAAAGTG ACAATATAGG CCAGTATAAG TCAGGTTCAC ATATTATAGA
  AGCAGCTTCA ACAAACCATA GATAAGTATT TATCTCTGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60627408	NES16288142	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47444643					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627408	NES16288142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1675 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	606 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1817 bp upstream
Rr664453	regulatory region 664453	1564 bp distal
Rr664454	regulatory region 664454	within coordinates
Rr664455	regulatory region 664455	1273 bp proximal
Rr664456	regulatory region 664456	1764 bp proximal
Tssr77601	transcription start site region 77601	1810 bp upstream
Tssr77602	transcription start site region 77602	1893 bp upstream
Tssr77603	transcription start site region 77603	1912 bp upstream
Tssr77604	transcription start site region 77604	1976 bp upstream
Tssr77605	transcription start site region 77605	1985 bp upstream