rs47444709 SNP Detail

Summary

• ID
  rs47444709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73188332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACT GTATTTAAAA ATTTACAAAT
  R
  TGAACTGTTT AAAATTGCAT TCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61020026	NES16105286	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A		G	A	G		G
ss322260282	CHEV_7_80683470	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47444709					SNP	A	A	A	A	A	A	G	A	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020026	NES16105286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73188332 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	1214 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	426 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	within coordinates
Tssr67202	transcription start site region 67202	614 bp downstream
Tssr67203	transcription start site region 67203	526 bp downstream
Tssr67204	transcription start site region 67204	492 bp downstream
Tssr67205	transcription start site region 67205	780 bp upstream
Tssr72947	transcription start site region 72947	818 bp upstream
Tssr72948	transcription start site region 72948	676 bp downstream